Prof. Vineet Bafna — Research Profile
University of California, San Diego · Department of Computer Science and Engineering
Graduate application deadlines
Department of Computer Science and Engineering
PhD in Computer Science / Computer Engineering
Fall 2027Application deadline
Dec 16, 2026 23:59 PST
Source: cse.ucsd.eduChecked Nov 2, 2026MS in Computer Science / Computer Engineering
Fall 2027Application deadline
Dec 16, 2026 23:59 PST
Source: cse.ucsd.eduChecked Nov 2, 2026
Considering this lab for grad school?
Save it to compare side by side with other labs. Jot a one-line note under each paper below — Application prep gathers your notes into an outline for your email to the PI and your statement of purpose. You do the writing; no AI.
What to prepare before emailing a PIAbout
Prof. Vineet Bafna at University of California, San Diego Department of Computer Science and Engineering lists Computational molecular biology, bioinformatics, proteomics, approximational algorithms, human genome, human proteome, protein identification, Expressed Sequence Tags (EST) analysis as their registered research area.
Research keywords
Recent papers
- Fast and accurate resolution of ecDNA sequence using Cycle-ExtractorNewPreprintGenome Research · Nov 4
- AmpliconSuite: an end-to-end workflow for analyzing focal amplifications in cancer genomesNature Methods · Oct 16
- DipSkmer: Reference-free population genomics with diploid genome skimsPLoS Computational Biology · Oct 13
From OpenAlex · papers whose author affiliation matches this university
Labs doing related research
Labs that recently published on topics this lab's recent papers share
Anshul Kundaje Lab
Stanford University · Computer Science
Integrating sequence-to-omics predictions and personal multi-omics for rare variant prioritizationNewPreprintmedRxiv · Oct 28Shared topic: Genomics and Phylogenetic Studies
Sriram Sankararaman Lab
University of California, Los Angeles · Computer Science
GPC: An expressive and tractable deep generative model for genetic variation dataPLoS Genetics · Oct 6Shared topic: Genetic diversity and population structure
Hicks Lab
Johns Hopkins University · Biomedical Engineering
Transcript quantification using context-aware MAPQ modelingNewPreprintbioRxiv (Cold Spring Harbor Laboratory) · Oct 31Shared topic: Genomics and Phylogenetic Studies
Other labs in this department
- Aaron Schulman Lab
- Albert Chern Lab
Numerical analysis, differential geometry, algebraic topology, differential equations, computational mathematics
- Alex C. Snoeren Lab
Computer systems, including operating systems and networking, particularly protocols to support secure and robust wide-area mobile computing
- Alex Orailoglu Lab
Electronic design automation, VLSI testing, synthesis of fault-tolerant integrated circuits (ICs)
- Alin Deutsch Lab
Semistructured and XML data, data security, adaptive distributed query design, the design and optimization of query languages
- Amy Ousterhout Lab
Operating systems and networks